ReactomePA: Reactome Pathway Analysis
This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.
Please cite the following article when using
Yu G and He QY*. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems, 2016,12(2):477-9.
Find out more on Featured Articles.
ReactomePA is easy, follow the guide in the Bioconductor page:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") ## biocLite("BiocUpgrade") ## you may need this biocLite("ReactomePA")
- Over-representation analysis
- Gene set enrichment analysis
Find out details and examples on Documentation.