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Evolutionary engineering reveals divergent paths when yeast is adapted to different acidic environments. Metabolic Engineering. 2016.

NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings. Nucleic Acids Research. 2016, 44(D1):D992-D999.

ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems. 2016, 12(2):477-479.


The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1. Genome Biology. 2015, 16:256.

Relationships between predicted moonlighting proteins, human diseases, and comorbidities from a network perspective. Frontiers in Physiology. 2015, 6:171.

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparision and visualization. Bioinformatics. 2015, 31(14):2382-2383.

DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics. 2015, 31(4):608-609.