clusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters

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The clusterProfiler package implements methods to analyze and visualize functional profiles of genomic coordinates (supported by ChIPseeker), gene and gene clusters.

clusterProfiler is released within the Bioconductor project and the source code is hosted on GitHub.

Author

Guangchuang Yu, School of Public Health, The University of Hong Kong.

Citation

Please cite the following article when using clusterProfiler:

doi citation Altmetric

Yu G, Wang L, Han Y and He Q*. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.

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Installation

Install clusterProfiler is easy, follow the guide on the Bioconductor page:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
## biocLite("BiocUpgrade") ## you may need this
biocLite("clusterProfiler")

Overview

Supported Analyses

Supported ontologies/pathways

Visualization

Useful utilities:

Find out details and examples on Documentation.

Find out more on projects.

Projects that depend on clusterProfiler

Bioconductor packages

Other applications

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