Publications

2016

  • ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

    Details PDF Slides Code Project

  • ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization

    Details PDF Code Project

2015

  • ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

    Details PDF Code Project

  • DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis

    Details PDF Code Project

2013

  • Putative cobalt- and nickel-binding proteins and motifs in Streptococcus pneumoniae

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  • A novel andrographolide derivative AL-1 exerts its cytotoxicity on K562 cells through a ROS-dependent mechanism

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2012

  • LXtoo: an integrated live Linux distribution for the bioinformatics community

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  • clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

    Details PDF Code Project

2011

  • Functional similarity analysis of human virus-encoded miRNAs

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  • A new method for measuring functional similarity of microRNAs

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  • Phosphoproteome profile of human lung cancer cell line A549

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2010

  • GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

    Details PDF Code Project