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ReactomePA
GuangchuangYu/ReactomePA
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The author
  • @guangchuangyu on Twitter
  • @GuangchuangYu on GitHub
  • Contact via email
Plea to against BMC

Documentation

Vignettes

  • https://bioconductor.org/packages/devel/bioc/vignettes/ReactomePA/inst/doc/ReactomePA.html

Blog posts

News and updates

  • ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization
  • BioC 3.1: NEWS of my BioC packages
  • BioC 3.2: NEWS of my BioC packages
  • BioC 3.3: NEWS of my BioC packages
  • BioC 3.4: NEWS of my BioC packages

Enrichment analysis

  • functional enrichment for GTEx paper
  • functional enrichment analysis with NGS data
  • leading edge analysis
  • why clusterProfiler fails
  • Comparison of clusterProfiler and GSEA-P

Visualization

  • dotplot for enrichment result
  • dotplot for GSEA result
  • enrichment map
  • showCategory parameter for visualizing compareCluster output

Find out more on https://guangchuangyu.github.io/tags/reactomepa.

Workflow

  • An end to end workflow for differential gene expression using Affymetrix microarrays
  • RNAseq workflow
© 2019 Released under the Artistic-2.0 license – Documentation built with Hugo using the Material theme.
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