Documentation

News and updates

• clusterProfiler in Bioconductor 2.8
• clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
• BioC 3.1: NEWS of my BioC packages
• BioC 3.2: NEWS of my BioC packages
• BioC 3.3: NEWS of my BioC packages
• BioC 3.4: NEWS of my BioC packages

ID conversion

• convert biological ID with KEGG API using clusterProfiler

Enrichment analysis

• GO analysis using clusterProfiler
• use simplify to remove redundancy of enriched GO terms
• KEGG Module Enrichment Analysis
• KEGG enrichment analysis with latest online data using clusterProfiler
• DAVID functional analysis with clusterProfiler
• functional enrichment for GTEx paper
• use clusterProfiler as an universal enrichment analysis tool
• functional enrichment analysis with NGS data
• leading edge analysis
• a formula interface for GeneOntology analysis bioinfoblog.it
• why clusterProfiler fails
• Comparison of clusterProfiler and GSEA-P

Visualization

• dotplot for enrichment result
• dotplot for GSEA result
• enrichment map
• showCategory parameter for visualizing compareCluster output

Find out more on https://guangchuangyu.github.io/tags/clusterprofiler.