发现Youtube上有一个视频叫Evolution of clusterProfiler, 是Landon Wilkins用Gource做的。于是我也来玩一下,看一下自己这几年码代码的过程。

把我几个Bioconductor包的commit log整合到一起,做了以下视频:

下面是这几个包的下载统计,从下图可以知道各个包在视频中出现的大概时间。2015年之后活动很频繁,因为在过去的一年半时间里,我花了非常多时间在ggtree上面。

PS1: 下载统计由dlstats获取。

PS2: 最近更新了这几个包的主页,包含最全面的信息,官方指定唯一入口哈:)

Citation

Yu G, Wang LG and He QY*. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization. Bioinformatics 2015, 31(14):2382-2383.

Yu G, Wang L, Han Y and He Q*. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.

G Yu, LG Wang, GR Yan, QY He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609.

G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. doi:10.1111/2041-210X.12628.

Yu G, Li F, Qin Y, Bo X*, Wu Y and Wang S*. GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics. 2010, 26(7):976-978.

G Yu, QY He*. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Molecular BioSystems 2016, 12(2):477-479.