ggtree paper published
I am quite exciting about it. Now ggtree is citable by doi:
In the review period,
ggtree had already been cited by several papers:
Annotating phylogenetic tree with image files (i.e. secondary structure).
Highlight clades and annotate phylogenetic tree with genotype table.
Annotate phylogenetic tree with binary matrix.
Annotate phylogenetic tree with sequence features.
Annotate with bootstrap values.
Visualize bootstrap value infer by RAxML and phyml on the same tree.
The ggtree paper provides several comprehensive and reproducible examples. It can be a good reference for complex tree annotation. My slides in 9th China R conference summarized the functionalities that
More information can be found in ggtree homepage. Hope you have fun with
G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution.