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ChIPseeker
GuangchuangYu/ChIPseeker
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The author
  • @guangchuangyu on Twitter
  • @GuangchuangYu on GitHub
  • Contact via email
Plea to against BMC

Documentation

Vignettes

  • ChIPseeker: an R package for ChIP peak Annotation, Comparison and Visualization

Blog posts

News and updates

  • BioC 3.1: NEWS of my BioC packages
  • BioC 3.2: NEWS of my BioC packages
  • BioC 3.3: NEWS of my BioC packages
  • BioC 3.4: NEWS of my BioC packages
  • parsing BED coordinates
  • ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

Annotation

  • ChIPseeker for ChIP peak annotation
  • multiple annotation in ChIPseeker

Visualization

  • visualization methods in ChIPseeker
  • upsetplot in ChIPseeker
  • covplot supports GRangesList

Functional Enrichment Analysis

  • functional enrichment analysis with NGS data

Comparison

  • ChIPseq data mining with ChIPseeker

Find out more on https://guangchuangyu.github.io/tags/chipseeker/.

Q&A

  • how to read multiple peak files
  • annotate lncRNA

Workflow

  • ChIPseq Analysis
  • NGS data analysis with R / Bioconductor: ChIP-Seq workflow
  • TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
© 2019 Released under the Artistic-2.0 license – Documentation built with Hugo using the Material theme.
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