Dear Dr. Guangchuang Yu, I write to you regarding a doubt concerning the enrichGO function from Clustalprofiler package. I have been used this package before, but now I’m using the same R script and I have an error message.
This is the command I use:
go.bp <- enrichGO(gene = gene.df$ENSEMBL, universe = universe.ENSEMBLID, keytype = ‘ENSEMBL’, OrgDb = org.Ce.eg.db, ont = ‘BP’, pAdjustMethod = ‘BH’, pvalueCutoff = 0.01, qvalueCutoff = 0.05, readable=T)
and the error is the following one:
No gene set have size > 10 … –> return NULL…
My input list is attached to this email (101 genes in total). When I use this list in a web resource such as GOrilla it gives to me the proper GO terms.
Thank you very much in advance. Best regards,
最近clusterProfiler用户的问题，这个问题还蛮普遍。这个我在《why clusterProfiler fails》中也有谈到，并不是能出结果就是好的。没有结果也是一种结果。